Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs2317884 chr16:82259737 A/C 0.000101 503 28.73 29.88 32.9 KM Plot
THCA rs233272 chr21:46041792 A/G 4.44E-5 503 31.93 29.45 11.65 KM Plot
THCA rs2356559 chr1:45981512 A/G 0.000134 503 22.25 31.7 31.98 KM Plot
THCA rs2363096 chr1:41514949 A/G 1.22E-7 501 27.33 30.48 31.93 KM Plot
THCA rs2363097 chr1:41543807 A/G 1.2E-7 502 27.33 30.48 31.92 KM Plot
THCA rs2368947 chr10:29326340 T/G 2.75E-9 500 31.8 30.38 29.28 KM Plot
THCA rs2373009 chr11:77945815 T/A 7.04E-5 498 32.48 31 27.3 KM Plot
THCA rs2389640 chr7:16479153 G/A 2.0E-12 480 31.4 31.25 31.93 KM Plot
THCA rs2392135 chr7:32807748 G/A 9.96E-5 500 31.43 31.57 32.1 KM Plot
THCA rs2392136 chr7:32808018 C/A 0.000111 497 31.43 31.47 32.1 KM Plot
THCA rs2407697 chr13:50120435 G/T 1.93E-5 499 34.52 30.37 31.72 KM Plot
THCA rs2450123 chr11:77952771 T/C 2.57E-5 498 31.83 31.02 27.3 KM Plot
THCA rs2510035 chr11:77953175 A/C 2.36E-5 500 32.48 30.63 27.3 KM Plot
THCA rs2510039 chr11:77944480 G/A 6.97E-5 499 32.1 31 27.3 KM Plot
THCA rs2510040 chr11:77944548 T/A 6.84E-5 498 32 31 27.3 KM Plot